species:   Fugra
pid:       PID0974
parent:    FgmilR-7dps-41
paralog:   
locus:     NC_026475.1:4351452-4351572
matures:   ['CUGUCGAUAGCUUGGCCUGGCA', 'CCGGCGCCAUGCUCUCCGCCUUU']
srr:       SRR6516242
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram NC_026475.1:4351452-4351572

2 out of bounds
6 alignments
6 proper strand
6 stranded perfect matches

************************                                                                        *************************
UCCUGUCGAUAGCUUGGCCUGGCAAAAUUUAUGCCCUAGUUGCCCUUGAAUUAACUGAUGCGCCCCCUCUCCCAAUAGCCUCUACAGCUUCGAGCUGGCCGGCGCCAUGCUCUCCGCCUUU
....((.((.(((.(((((((((.........((..((((((.........))))))..)).......................(((((...)))))))))).)))).))).)).))....
--CUGUCGAUAGCUUGGCCUGGCA------------------------------------------------------------------------------------------------- l=22 a=3 c
--------------------------------------------------------------------------------------------------CCGGCGCCAUGCUCUCCGCCUUU l=23 a=0 c*
--CUGUCGAUAGCUUGGCCUGGCA------------------------------------------------------------------------------------------------- l=22 a=3 ma
--------------------------------------------------------------------------------------------------CCGGCGCCAUGCUCUCCGCCUUU l=23 a=0 ma*

---UGUCGAUAGCUUGGCCUGGCAA------------------------------------------------------------------------------------------------ l=22 a=1 
--CUGUCGAUAGCUUGGCCUGGC-------------------------------------------------------------------------------------------------- l=21 a=2 
--CUGUCGAUAGCUUGGCCUGGCA------------------------------------------------------------------------------------------------- l=22 a=3 (c,ma)

mb-01011
ax-1001111
ku-01
ss-111111101110
fn-111
